Spatial Trends of the Potential Association Between Benthic Macrofauna and non-Source Point Sediment Pollutants in the Yucatán Continental Shelf.

Here we explored the potential association of the benthic macrofauna species composition with aliphatic hydrocarbons, polycyclic aromatic hydrocarbons and metals concentration detected in the sediments of the Yucatan continental Shelf (YCS), Mexico. The main objective was to provide insights on the temporal and spatial changes of such association in the function of the longitudinal and depth gradient. Benthic species composition, Al, Ni and Pb showed significant differences among YCS sub-regions (Western Caribbean, Mid-Yucatan and West Yucatan), and depth. Aliphatic and aromatic hydrocarbons had similar concentration in all sub-regions. The species composition was significantly associated with the levels of aliphatic hydrocarbons in the shallow sites (15-50 m) of the YCS sub-regions. Our results provide the first insights into the presence and spatial trends of different concentration of non-point source hydrocarbons and metals along the YCS, essential to establish the current ecological condition and to set a reference condition to identify further changes.

Effects of a Light Crude Oil Spill on a Tropical Coastal Phytoplankton Community.

Oiling scenarios following spills vary in concentration and usually can affect large coastal areas. Consequently, this research evaluated different crude oil concentrations (10, 40, and 80 mg L-1) on the nearshore phytoplanktonic community in the southern Gulf of Mexico. This experiment was carried out for ten days using eight units of 2500 L each; factors monitored included shifts in phytoplankton composition, physicochemical parameters and the culturable bacterial abundance of heterotrophic and hydrocarbonoclastic groups. The temperature, salinity, and nutrient concentrations measured were within the ranges previously reported for Yucatan Peninsula waters. The total hydrocarbon concentration (TPH) in the control at T0 indicated the presence of hydrocarbons (PAHs 0.80 µg L-1, aliphatics 7.83 µg L-1 and UCM 184.09 µg L-1). At T0, the phytoplankton community showed a similar assemblage structure and composition in all treatments. At T10, the community composition remained heterogeneous in the control, in agreement with previous reports for the area. However, for oiled treatments, Bacillariophyceae dominated at T10. Hydrocarbonoclastic bacteria were associated with oiled treatments throughout the experiment, while heterotrophic bacteria were associated with control conditions. Our results agreed with previous works at the taxonomic level showing the presence of Bacillariophyceae and Dinophyceae in oil-related treatments, where these groups showed the major interactions in co-occurrence networks. In contrast, Chlorophyceae showed the key node in the co-occurrence network for the control. This study aims to contribute to knowledge on phytoplankton community shifts during a crude oil spill in subtropical oligotrophic regions.

Shelf and deep-water benthic macrofauna assemblages from the western Gulf of Mexico: Temporal dynamics and environmental drivers.

Shelf and deep-water soft-bottom macrofauna were explored in the western Gulf of Mexico in terms of species and functional trait assemblages. Their variation was analysed as functions of depth and time, and the relationship with sea-bottom environmental conditions was examined to disentangle their association with potential environmental drivers. Four consecutive cruises (two per year, at the end of the dry and rainy seasons) were performed during 2016-2017 at 27 fixed stations distributed from 42 to 3565 m depth. Changes in macrofauna composition were tested considering species and functional trait assemblages. Environmental variables associated with sediment features (i.e., grain structure, organic matter, pH, redox), oceanographic conditions (i.e., temperature, dissolved oxygen, particulate organic carbon flux) and potential contaminants (i.e., hydrocarbons and metals) were analysed to identify potential drivers that would shape the structure of macrofauna assemblages. The results suggest that the structures of both species and functional trait assemblages change according to depth and show temporal variation in composition at seasonal and interannual scales. The effect of temporal variation represented about 12% of total variation in the assemblages (11.4 for species and 12.5% for functional-traits). Different patterns of spatial and temporal variation between shelf and deep benthic communities were observed. Variation in species assemblages on the shelf were related to the variation in lead, polycyclic aromatic hydrocarbons and the fine sand ratio. In the deep benthos, particulate carbon flux showed high correlation with the spatial and temporal variation in species assemblage. In the deep benthos the changes in the species assemblage between the dry and the rainy seasons and the interannual variation were highly correlated with particulate organic carbon input in the area.

A multi-taxonomic framework for assessing relative petrochemical vulnerability of marine biodiversity in the Gulf of Mexico.

A fundamental understanding of the impact of petrochemicals and other stressors on marine biodiversity is critical for effective management, restoration, recovery, and mitigation initiatives. As species-specific information on levels of petrochemical exposure and toxicological response are lacking for the majority of marine species, a trait-based assessment to rank species vulnerabilities to petrochemical activities in the Gulf of Mexico can provide a more comprehensive and effective means to prioritize species, habitats, and ecosystems for improved management, restoration and recovery. To initiate and standardize this process, we developed a trait-based framework, applicable to a wide range of vertebrate and invertebrate species, that can be used to rank relative population vulnerabilities of species to petrochemical activities in the Gulf of Mexico. Through expert consultation, 18 traits related to likelihood of exposure, individual sensitivity, and population resilience were identified and defined. The resulting multi-taxonomic petrochemical vulnerability framework can be adapted and applied to a wide variety of species groups and geographic regions. Additional recommendations and guidance on the application of the framework to rank species vulnerabilities under specific petrochemical exposure scenarios, management needs or data limitations are also discussed.

Assessing the Diversity of Benthic Sulfate-Reducing Microorganisms in Northwestern Gulf of Mexico by Illumina Sequencing of dsrB Gene.

This study investigates the community composition, structure, and abundance of sulfate-reducing microorganisms (SRM) in surficial sediments of the Northwestern Gulf of Mexico (NWGoM) along a bathymetric gradient. For these purposes, Illumina sequencing and quantitative PCR (qPCR) of the dissimilatory sulfite reductase gene beta subunit (dsrB gene) were performed. Bioinformatic analyses indicated that SRM community was predominantly composed by members of Proteobacteria and Firmicutes across all the samples. However, Actinobacteria, Thermodesulfobacteria, and Chlorobi were also detected. Phylogenetic analysis indicated that unassigned dsrB sequences were related to Deltaproteobacteria and Nitrospirota superclusters, Euryarchaeota, and to environmental clusters. PCoA ordination revealed that samples clustered in three different groups. PERMANOVA indicated that water depth, temperature, redox, and nickel and cadmium content were the main environmental drivers for the SRM communities in the studied sites. Alpha diversity and abundance of SRM were lower for deeper sites, suggesting decreasing sulfate reduction activity with respect to water depth. This study contributes with the understanding of distribution and composition of dsrAB-containing microorganisms involved in sulfur transformations that may contribute to the resilience and stability of the benthic microbial communities facing metal and hydrocarbon pollution in the NWGoM, a region of recent development for oil and gas drilling.

Testing marine regional-scale hypotheses along the Yucatan continental shelf using soft-bottom macrofauna.

Different hypotheses related to the regional-scale configuration of the Yucatan Continental Shelf (YCS) between the Gulf of Mexico (GoM) and the Caribbean Sea have been proposed. Hypotheses regarding its regional boundaries include: (i) an ecoregional boundary at Catoche Cape, dividing the Western Caribbean and the Southern GoM ecoregions; and (ii) a boundary within the Southern GoM ecoregion at 89°W, separating the West and Mid-Yucatan areas. We tested the hypothesis of no variation in benthic macrofaunal assemblages between regions delimited by the former boundaries using the species and functional traits of soft-bottom macrofauna. We considered that the depth and temporal environmental dynamics might interact with regional variations, generating complex benthic community patterns. The data were collected over five years (2010-2012, 2015-2016) at 86 stations (N = 1, 017 samples, 10-270 m depth), comprising 1,327 species with 45 combinations of functional traits. The variation in species composition and functional trait assemblages were both consistent with the occurrence of three separate regions in the Yucatan Peninsula (West Yucatan, Mid-Yucatan and Western Caribbean). This regional configuration was consistent with changes in assemblage structure and depth zonation as well as temporal variation. Along with spatial and temporal variation, diversity diminished with depth and different regions exhibited contrasting patterns in this regard. Our results suggest that the spatial and temporal variation of soft-bottom macrofauna at YCS demonstrate the complex organization of a carbonate shelf encompassing different regions, which may represent transitional regions between the Caribbean and the GoM.

Changes in the Bacterioplankton Community Structure from Southern Gulf of Mexico During a Simulated Crude Oil Spill at Mesocosm Scale.

The southern Gulf of Mexico (sGoM) is highly susceptible to receiving environmental impacts due to the recent increase in oil-related activities. In this study, we assessed the changes in the bacterioplankton community structure caused by a simulated oil spill at mesocosms scale. The 16S rRNA gene sequencing analysis indicated that the initial bacterial community was mainly represented by Gamma-proteobacteria, Alpha-proteobacteria, Flavobacteriia, and Cyanobacteria. The hydrocarbon degradation activity, measured as the number of culturable hydrocarbonoclastic bacteria (CHB) and by the copy number of the alkB gene, was relatively low at the beginning of the experiment. However, after four days, the hydrocarbonoclastic activity reached its maximum values and was accompanied by increases in the relative abundance of the well-known hydrocarbonoclastic Alteromonas. At the end of the experiment, the diversity was restored to similar values as those observed in the initial time, although the community structure and composition were clearly different, where Marivita, Pseudohongiella, and Oleibacter were detected to have differential abundances on days eight-14. These changes were related with total nitrogen (p value = 0.030 and r2 = 0.22) and polycyclic aromatic hydrocarbons (p value = 0.048 and r2 = 0.25), according to PERMANOVA. The results of this study contribute to the understanding of the potential response of the bacterioplankton from sGoM to crude oil spills.

Metazoan parasite infracommunities of the dusky flounder (Syacium papillosum) as bioindicators of environmental conditions in the continental shelf of the Yucatan Peninsula, Mexico.

BACKGROUND: We assessed metrics of the metazoan parasite infracommunities of the dusky flounder (Syacium papillosum) as indicators of aquatic environmental health of the Yucatan Shelf (YS) prior to oil extraction. We sampled the dusky flounder and its parasites along the YS, mostly during the 2015 north wind season (November-April). Our aims were: (i) to determine whether the parasite infracommunity metrics of S. papillosum exhibit significant differences among YS subregions; (ii) to determine whether the probability of the occurrence of its parasite species and individuals were affected by environmental variables, nutrients, heavy metals and hydrocarbons at the seascape level; and (iii) to determine whether there were statistical differences between the parasite infracommunity metrics of S. papillosum from YS and those of Syacium gunteri from the Campeche Sound. Multivariate statistical analyses and generalised additive models (GAMs) were used to examine the potential statistical associations between the contaminants, environmental variables and parasite community metrics, and the maximum entropy algorithm (MaxEnt) was used to characterise the habitat's suitability for the parasite's probability of occurrence. RESULTS: We recovered 48 metazoan parasite species from 127 S. papillosum, with larval cestodes and digeneans being the most numerically-dominant. Multivariate analyses showed significant differences in parasite infracommunity metrics among Western YS, Mid YS and Caribbean subregions, with the latter being the richest in species but not in individuals. The GAM and MaxEnt results indicated a negative effect of top predators (e.g. sharks and rays) removal on parasite metrics. The parasite infracommunities of S. papillosum were twice as rich in the number of species and individuals as those reported for S. gunteri from the Campeche Sound. CONCLUSIONS: The significant differences among subregions in parasite metrics were apparently due to the interruption of the Yucatan current during the north wind season. The fishing of top predators in combination with an influx of nutrients and hydrocarbons in low concentrations coincides with an increase in larval cestodes and digeneans in S. papillosum. The dusky flounder inhabits a region (YS) with a larger number of metazoan parasite species compared with those available for S. gunteri in the Campeche Sound, suggesting better environmental conditions for transmission in the YS.

Gammaropsis elvirae sp. nov., a widely distributed amphipod (Amphipoda: Photidae) in the Yucatan Shelf, with ecological comments and a key for the genus in tropical America.

Gammaropsis elvirae sp. nov. is described and illustrated here, as a new species of the family Photidae Boeck, 1871, occurring on sites widely distributed in the soft-sediment habitats from the Yucatan shelf, southern Gulf of Mexico. This new species differs from all other congeners by a unique set of characteristics: lateral cephalic lobes rounded; outer lobes of lower lip with one cone on each lobe; gnathopod 1 propodus longer than carpus; gnathopod 2 propodus enlarged with small convoluted processes on posterior margin and palmar angle undefined; gnathopod 2 dactylus short, less than one half in length of propodus; dense setation on basis, carpus, and propodus of gnathopod 2; epimeral plates 1-3 rounded; inner ramus of uropods 1-3 longer than outer ramus; and telson emarginated. Ecological comments on spatial distribution and associated environmental variables are included, as well an identification key to the genus in tropical America.

Variation in species diversity of deep-water megafauna assemblages in the Caribbean across depth and ecoregions.

Diversity patterns of the deep-sea megafauna in the Caribbean Basin and the Guiana ecoregion were analyzed in order to test the hypothesis of species richness variation as a function of depth and the hypothesis of non-differences between ecoregions by analyzing spatial patterns of five taxa and a merged assemblage. Collections of five taxa (corals, sea stars, sea urchins, sea lilies and gastropods) were obtained from seven oceanographic expeditions aboard the R/V Pillsbury at 310 stations between 60 and 7500 m depth. Data were sorted according to depth zones and ecoregions and were analyzed in order to estimate species richness, changes in species composition and distinction of ß-diversity by species turnover or by nestedness. The observed patterns of diversity were consistent between taxa and their assemblage: Species richness increased from the continental shelf (60-200 m deep) to the slope (200-2000 m deep), followed by a decrease at the continental rise-abyssal zone. We detected marked changes in species composition according to depth ranges. Changes in species composition in relation to ecoregions were also detected. In general, the Caribbean Basin lacks important physical barriers, causing high deep-sea ecosystem connectivity; however, variation in composition could be related to changes in environmental conditions associated with productivity and/or continental influences.

A dataset on the species composition of amphipods (Crustacea) in a Mexican marine national park: Alacranes Reef, Yucatan.

BACKGROUND: Alacranes Reef was declared as a National Marine Park in 1994. Since then, many efforts have been made to inventory its biodiversity. However, groups such as amphipods have been underestimated or not considered when benthic invertebrates were inventoried. Here we present a dataset that contributes to the knowledge of benthic amphipods (Crustacea, Peracarida) from the inner lagoon habitats from the Alacranes Reef National Park, the largest coral reef ecosystem in the Gulf of Mexico. The dataset contains information on records collected from 2009 to 2011. Data are available through Global Biodiversity Information Facility (GBIF). NEW INFORMATION: A total of 110 amphipod species distributed in 93 nominal species and 17 generic species, belonging to 71 genera, 33 families and three suborders are presented here. This information represents the first online dataset of amphipods from the Alacranes Reef National Park. The biological material is currently deposited in the crustacean collection from the regional unit of the National Autonomous University of Mexico located at Sisal, Yucatan, Mexico (UAS-Sisal). The biological material includes 588 data records with a total abundance of 6,551 organisms. The species inventory represents, until now, the richest fauna of benthic amphipods registered from any discrete coral reef ecosystem in Mexico.

A ten-month diseases survey on wild Litopenaeus setiferus (Decapoda: Penaeidae) from Southern Gulf of Mexico.

The development of shrimp aquaculture in Mexican coasts of the Gulf of Mexico began to be explored using the Pacific white shrimp Litopenaeus vannamei in the mid 90's. Many concerns over the risk of disease transmission to the economically important native penaeids, have been the main deterrent for the aquaculture of L. vannamei in the region. Concurrently, more than 10 years of research experience on the aquaculture suitability of the native Litopenaeus setiferus from the Terminos Lagoon, in the Yucatán Peninsula, have been accumulated. The aim of this study was then to determine the seasonal variations of the naturally acquired diseases and the possible detection of exotic pathogens. For this, random subsamples (n-60) of juveniles L. setiferus were collected from monthly captures. In order to detect the widest range of pathogens, including infectious hypodermal and hematopoietic necrosis (IHHNV) and white spot syndrome (WSSV) viruses, both histopathological and molecular methods were employed. Monthly prevalence (%) was calculated for every finding. We were able to detect a total of 16 distinct histological anomalies, most of which the presumptive aetiological agent was readily identified. PCR results for viruses were negative. For some pathogens and symbionts, the prevalence was significantly different between the adult and juvenile populations. Prevalence of diseases tended to be higher in juvenile shrimp than in adults. The results of this study indicated that L. setiferus carry a wide variety of pathogens and symbionts that seem to be endemic to penaeids of the Gulf of Mexico, and those juveniles were more conspicuous to acquire pathogens and symbionts than adults.

A ten-month diseases survey on wild Litopenaeus setiferus (Decapoda: Penaeidae) from Southern Gulf of Mexico / Diez meses de análisis de las enfermedades en especímenes silvestres de Litopenaeus setiferus en el Sur del Golfo de México

The development of shrimp aquaculture in Mexican coasts of the Gulf of Mexico began to be explored using the Pacific white shrimp Litopenaeus vannamei in the mid 90´s. Many concerns over the risk of disease transmission to the economically important native penaeids, have been the main deterrent for the aquaculture of L. vannamei in the region. Concurrently, more than 10 years of research experience on the aquaculture suitability of the native Litopenaeus setiferus from the Terminos Lagoon, in the Yucatán Peninsula, have been accumulated. The aim of this study was then to determine the seasonal variations of the naturally acquired diseases and the possible detection of exotic pathogens. For this, random subsamples (n~60) of juveniles L. setiferus were collected from monthly captures. In order to detect the widest range of pathogens, including infectious hypodermal and hematopoietic necrosis (IHHNv) and white spot syndrome (WSSv) viruses, both histopathological and molecular methods were employed. Monthly prevalence (%) was calculated for every finding. We were able to detect a total of 16 distinct histological anomalies, most of which the presump- tive aetiological agent was readily identified. PCR results for viruses were negative. For some pathogens and symbionts, the prevalence was significantly different between the adult and juvenile populations. Prevalence of diseases tended to be higher in juvenile shrimp than in adults. The results of this study indicated that L. setiferus carry a wide variety of pathogens and symbionts that seem to be endemic to penaeids of the Gulf of Mexico, and those juveniles were more conspicuous to acquire pathogens and symbionts than adults.

Durante la década de los 90´s se introdujo el camarón blanco del Pacífico Litopenaeus vannamei a los Estados costeros mexicanos del Golfo de México con fines acuícolas, por lo que desde entonces existe preocupación por la posible introducción de enfermedades que puedan afectar a las poblaciones de camarones nativos. La investigación sobre la domesticación de especies nativas para una acuacultura sustentable se ha realizado por más de 10 años, sin embargo, aún existe escasa información sobre las enfermedades que se presentan de manera natural en estas poblaciones y posible trasfaunación. El presente estudio aborda el problema de las enfermedades encontradas en subpoblaciones de jóvenes y adultos de Litopenaeus setiferus del Área natural protegida Laguna de Términos, estado de Campeche, México. Técnicas de histología y biología molecular fueron utilizadas como herramientas de diagnóstico. Se encontró que L. setiferus es portador de patógenos y simbiontes endémicos del Golfo de México, y comparativamente, los jóvenes son más susceptibles en adquirir estas infecciones que los adultos, como probable respuesta al ambiente lacustre que ocupan. No se encontró evidencia de los virus IHHNv y WSSv, aunque en trabajos más recientes en algunos Estados del Norte ya se han detectado en poblaciones silvestres.

Spatial structure of the helminth parasite communities of the tonguefish, Symphurus plagiusa, from the Campeche coast, southern Mexico.

The goals of this paper were to determine whether the helminth communities of the blackcheek tonguefish, Symphurus plagiusa, exhibit a spatial structure and, if so, to determine the relative influence of selected environmental and spatial variables. The parasite communities of tonguefish and environmental data (e.g., temperature, salinity, oxygen) were sampled monthly over a network of 37 stations over 1 year (February 2006 to January 2007). Analysis of similarities (ANOSIM), non-metric multidimensional scaling (NMDS) and redundancy analysis (RDA) were used. Spatial variables were generated using the analysis of principal coordinates of neighbour matrices (PCNM) method. A total of 1,010 flatfishes and nine helminth taxa were collected. For the environmental variables, hierarchical cluster analyses produced groups of stations associated with the Yucatan dry, rainy and winter seasons. At the infracommunity level, there was no group formation as indicated by ANOSIM and NMDS nor association with environmental or spatial variables. At the component community level, there was significant group formation, and RDA analyses of core, satellite and all species produced significant associations with environmental variables. However, model fit improved substantially (from 17-52% to 49-83% of explained variance) when the spatial variables (variables generated with PCNM method) were added. Thus, the helminth component communities of S. plagiusa were affected by associated environmental variables and unknown ecological processes captured by the spatial variables acting at different spatial scales over time. In contrast, at the infracommunity level there was apparently a very fine spatial grain, where the numerical dominance of core species resulted in biased group formation.

Rainfall induces time-lagged changes in the proportion of tropical aquatic hosts infected with metazoan parasites.

Rainfall serves as a powerful driving force, shifting temporal abundance and prevalence patterns in parasites and free-living aquatic organisms in tropical environments. However, there is a lack of sound evidence showing the temporal scales at which rainfall influences infection parameters of parasites in the tropics either directly by affecting the parasite life cycle or indirectly by modifying host population abundance. In the present study, we demonstrate that changes in rainfall patterns lead to changes in the proportion of infected hosts with several parasite species, causing immediate or lagged favourable conditions for an increase in levels of infection. However, the temporal scale of the influence of rainfall varied depending on the ecological characteristics of aquatic ecosystems. Despite the environmental heterogeneity and stochastic events (storms and hurricanes) which affect the study sites, the proportion of infected hosts shows frequency cycles on a yearly scale, suggesting that environmental changes are within the range of variability that naturally occur at the study sites. We propose that the incorporation of stochastic events into long-term predictive models is crucial for understanding the potential effects of global climate change on infection parameters of tropical parasites.

Can parasites really reveal environmental impact?

This review assesses the usefulness of parasites as bioindicators of environmental impact. Relevant studies published in the past decade were compiled; factorial meta-analysis demonstrated significant effects and interactions between parasite levels and the presence and concentration of various pollutants and/or environmental stressors. These effects and interactions were also evident in subsets of studies that used different methods such as field surveys or experimental exposure. From this meta-analysis we conclude that parasites are useful bioindicators of environmental impact. Further, by examining aspects of study design, we put forward recommendations for the design of future studies to evaluate anthropogenic impact on host-parasite interactions and increase the efficiency of environmental monitoring programs.

The checkered puffer (Spheroides testudineus) and its helminths as bioindicators of chemical pollution in Yucatan coastal lagoons.

The suitability of using helminth communities as bioindicators of environmental quality of the Yucatan coastal lagoons status was tested on the checkered puffer (Spheroides testudineus) in four coastal lagoons along the Yucatan coast. The concentration of chemical pollutants in sediments, water quality parameters, helminth infracommunity characteristics, as well as fish physiological biomarkers, including EROD (7-ethoxyresorufin-O-deethylase) and catalase activities, were measured. Results from sediment analyses demonstrated the presence of hydrocarbons, organochlorine pesticides and polychlorinated biphenyls at varying concentrations, some of which exceeded the Probability Effect Level (PEL). Significant negative associations among organochlorine pesticides, infracommunity characteristics and fish physiological responses were observed in most of the lagoons. Results suggest that EROD activity and parasite infracommunity characteristics could be useful tools to evaluate the effects of chemical pollutants on the fish host and in the environment. Importantly, certain parasites appear to influence biomarker measurements, indicating that parasites should be considered in ecotoxicological studies.